The RNA World, 3rd Ed. (2006, Volume 43)

Cover Page

Recent studies on the activities of RNA in the cell have revolutionized our understanding of the many roles played by this molecule. The first two editions of The RNA World (1993, 1999) shed light on the pre-biotic era dominated by this versatile molecule, and provided an overview of the state of RNA research at the time. The new third edition of The RNA World updates this perspective, describing the vast array of newly discovered roles for RNA in the modern world. The updated original chapters are supplemented with new chapters on RNA-protein complexes, snRNPs and snoRNPs, telomerase RNA, RNAi, microRNAs, noncoding RNA, and many other subjects. This book is essential reading for anyone interested in the biology of nucleic acids and gene regulation and a valuable resource for teaching these concepts.

REVIEWS OF THE PREVIOUS EDITIONS

"...rich source of information and indispensable reading for researchers investigating the biology of nucleic acids. Because of its wider scope, The RNA World will also attract nonspecialist readers interested in how life on Earth may have originated and evolved."

-Science

"The book contains a wealth of information in a condensed form and thus, for some years to come, will constitute a gold mine of bibliographic value even for those specializing in the various areas that are covered.... All in all, a great book!"

-Cell

"Although it is fun, speculation about origins in the absence of much data is not the inclination of most people who study RNA. Fortunately, the origin of life is not the only topic covered by this book. This volume, like the last, also provides excellent reviews of many aspects of RNA function, each written by an expert in the field. We believe that it is this second objective of The RNA World that makes it most useful to RNA specialists and nonspecialists alike."

-RNA

"Overall, the book is splendid and a 'must' for serious practitioners in the field. It is also essential for students taking graduate courses in nucleic acids; The RNA World should get them excited about being part of the scientific enterprise that brings RNA back to the future."

-Trends in Biochemical Sciences

Table of Contents

Preface/Front Matter
R.F. Gesteland, T.R. Cech, J.F. Atkins
Excerpt       PDF     (i-xxiii)
 
1 Setting the Stage: The History, Chemistry, and Geobiology behind RNA
Steven A. Benner, Matthew A. Carrigan, Alonso Ricardo, Fabianne Frye
Excerpt       PDF     (1-21)
 
2 Progress toward Understanding the Origin of the RNA World
Gerald F. Joyce, Leslie E. Orgel
Excerpt       PDF     (23-56)
 
3 Protocells: Genetic Polymers Inside Membrane Vesicles
Irene A. Chen, Martin M. Hanczyc, Peter L. Sazani, Jack W. Szostak
Excerpt       PDF     (57-88)
 
4 Riboswitches and the RNA World
Ronald R. Breaker
Excerpt       PDF     (89-107)
 
5 Catalytic Strategies of Self-Cleaving Ribozymes: Relics of an RNA World?
Ailong Ke, Jennifer A. Doudna
Excerpt       PDF     (109-131)
 
6 How the Group I Intron Works: A Case Study of RNA Structure and Function
James L. Hougland, Joseph A. Piccirilli, Marcello Forconi, Jihee Lee, Daniel Herschlag
Excerpt       PDF     (133-205)
 
7 RNA, Lipids, and Membranes
Tadeusz Janas, Teresa Janas, Michael Yarus
Excerpt       PDF     (207-225)
 
8 Aminoacyl tRNA Synthetases: From the RNA World to the Theater of Proteins
Paul Schimmel, Kirk Beebe
Excerpt       PDF     (227-255)
 
9 The Roles of RNA in the Synthesis of Protein
Peter B. Moore, Thomas A. Steitz
Excerpt       PDF     (257-285)
 
10 Evolution of Ribosomes and Translation from an RNA World
Harry F. Noller
Excerpt       PDF     (287-307)
 
11 The RNP World
Thomas R. Cech, Dino Moras, Kiyoshi Nagai, James R. Williamson
Excerpt       PDF     (309-326)
 
12 The Ever-Growing World of Small Nuclear Ribonucleoproteins
Kazimierz T. Tycowski, Nikolay G. Kolev, Nicholas K. Conrad, Victor Fok, Joan A. Steitz
Excerpt       PDF     (327-368)
 
13 Spliceosome Structure and Function
Cindy L. Will, Reinhard Lührmann
Excerpt       PDF     (369-400)
 
14 Uridine Insertion/Deletion RNA Editing as a Paradigm for Site-specific Modifications of RNA Molecules
Larry Simpson
Excerpt       PDF     (401-417)
 
15 Telomerase RNA
Elizabeth H. Blackburn
Excerpt       PDF     (419-436)
 
16 The Shapely mRNA: Knotting Ventured, Knotting Gained
John F. Atkins, Raymond F. Gesteland, Richard J. Jackson, Norma M. Wills
Excerpt       PDF     (437-467)
 
17 Group II Introns: Ribozymes That Splice RNA and Invade DNA
Anna Marie Pyle, Alan M. Lambowitz
Excerpt       PDF     (469-505)
 
18 SINEs and LINEs: Troublemakers, Saboteurs, Benefactors, Ancestors
Alan M. Weiner
Excerpt       PDF     (507-533)
 
19 The Biology of Short RNAs
Christian P. Petersen, John G. Doench, Alla Grishok, Phillip A. Sharp
Excerpt       PDF     (535-565)
 
20 Versatile Roles of Small RNA Regulators in Bacteria
Gisela Storz, Susan Gottesman
Excerpt       PDF     (567-594)
 
21 Large Noncoding RNAs in Mammalian Gene Dosage Regulation
Rebecca J. Spencer, Jeannie T. Lee
Excerpt       PDF     (595-630)
 
22 Predicting RNA Secondary Structure
David H. Mathews, Susan J. Schroeder, Douglas H. Turner, Michael Zuker
Excerpt       PDF     (631-657)
 
23 A Modular and Hierarchical Approach for All-Atom RNA Modeling
Benoît Masquida, Eric Westhof
Excerpt       PDF     (659-681)
 
24 Automated In Vitro Selection and Microarray Applications for Functional RNA Sequences
Andrew D. Ellington, J. Colin Cox, Jennifer F. Lee, James R. Collett
Excerpt       PDF     (683-719)
 
25 RNA Folding, Unfolding, and Dynamics, One Molecule at a Time
Ignacio Tinoco, Jr., Bibiana Onoa
Excerpt       PDF     (721-745)
 
APPENDIX: Contents of the Previous Edition
Excerpt       PDF     (747-751)
 
Index
Excerpt       PDF     (753-768)